HELP: Migrating and moving data.

Good day.
I am trying to migrate not only to a new HTPC, but also to a new SAMBA environment, but it is not working as expected. What I am missing is the LATEST Movie and TV lists.

What I am changing on HTPC:
1. Moving from a ION based pc to an INTEL based PC.
2. Moving from OpenElec (latest) to XBMCBuntu.

What I am changing on SMB:
1. Moving from a 8TB to a 12TB Server.
2. Moving from FREENAS to OpenMediaVault.
3. Moving from local to MySQL databases. (I have 4 HTPC's and would like to centralize everyting.)

I have changed/copied:
1. The full USERDATA.
2. Changed the paths in ADVANCEDSETTINGS, SOURCES and MEDIA (I can't remember the exact filenames, right now).
3. Changed to the MySQL DB. (Everything was imported 100%)
4. Exported and IMPORTED the WATCHED states. (Through the plugin made available.)

What am I doing wrong? I am seeing old stuff into the LATEST list, thus not reflecting as I expected...

Kind regards
Aubrey Kloppers
Cape Town